PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000837.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 569aa    MW: 63606.3 Da    PI: 8.4101
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000837.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1848146291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              fY eY+k vGF+vr+s+ kk  rng+it r++vCs++g+++  +++          ++  +r+r+++r+gC a++++k+++ g + 
  Itr_sc000837.1_g00008.1  48 FYFEYGKAVGFDVRRSTVKKD-RNGNITVRHLVCSRQGFKQVLRDQcaelevgngvAVGGSRRRTSNRVGCPARFVLKRDNAGSFI 132
                              9***************99998.8888***************9988899*******999999************************* PP

                     FAR1  78 vtkleleHnHelap 91 
                              v+ le  H+H+l++
  Itr_sc000837.1_g00008.1 133 VHLLEISHTHPLCS 146
                              ************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1648145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.631365403IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4378405IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
SADTFSPEID CTATYTSNDT KFWAPICDDS ITPYIGQVFG TIEQGEVFYF EYGKAVGFDV  60
RRSTVKKDRN GNITVRHLVC SRQGFKQVLR DQCAELEVGN GVAVGGSRRR TSNRVGCPAR  120
FVLKRDNAGS FIVHLLEISH THPLCSDASR PFLRANRYMD VTHQNFVASC AKANIGPSKS  180
FKLYREFVGD FSNIGATRND FRNMKRDLLA LINGADAQMI IAKFRGRQER CPDFYYDYAV  240
DAEEQLCRLF WTDRFARESY ACFGDVMSFD ATYDTNNLIE FLCHYDGAIE AQRYEQAKLN  300
AACEGHLPKM ITPLAIERHA AAVYTIQLFY EIQNEISKAC FSCRVVSVHQ TGVVKQYVIH  360
DVYGNESKVE YNSDEAAVHC TCKMFEKVGL LCSHGFVALK DAGMEVIPST YVLVRWSRGA  420
CVRSVSRTDG SSNNSVNNHI PPQHKMWVDF HTCLSLAGED QERILMVSNA VQALRESLSV  480
SADITPKRRG KHSVVENFTG TVRVDPVVIR PPVVARNKGR GKRLKGGREV AVTMKKPGGR  540
KCATCGLANG HDSRNCVLRK MNPECEGSS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1683922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-23FAR1-related sequence 5